Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1105Putative membrane protein. (291 aa)    
Predicted Functional Partners:
BMS_2516
Putative lipoprotein.
  
     0.735
BMS_3180
Putative exported protein.
  
     0.729
BMS_0585
Putative exported protein.
  
   0.666
BMS_2223
Hypothetical protein.
  
     0.634
BMS_1425
Putative exported protein.
  
     0.606
BMS_1855
Conserved hypothetical protein.
  
     0.589
BMS_0090
Conserved hypothetical protein; Shows weak similarity to proteins involved in surface polysaccharide biosynthesis so may be a glycosyl transferase.
  
     0.579
BMS_2173
Conserved hypothetical protein.
  
     0.575
BMS_2300
Putative membrane protein.
 
   
 0.569
BMS_1104
Putative tRNA (guanine-N(7)-)-methyltransferase.
  
    0.565
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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