STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1154Putative exported protein. (531 aa)    
Predicted Functional Partners:
ftsK
DNA translocase; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.553
BMS_1925
Hypothetical protein.
 
     0.529
BMS_2065
Putative outer membrane protein.
    
 
 0.507
BMS_1909
Conserved hypothetical protein.
    
   0.481
BMS_1153
Conserved hypothetical protein.
       0.468
BMS_1152
Conserved hypothetical protein.
       0.462
BMS_3332
Putative exported aminopeptidase.
  
  
 0.438
BMS_1563
Putative membrane protein.
 
 
 0.437
BMS_0709
Putative membrane protein.
  
     0.427
tRNA-Leu
tRNA-Leu; tRNA Leu anticodon CAA, Cove score 50.42.
  
    0.424
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.