STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1206Putative membrane protein. (269 aa)    
Predicted Functional Partners:
BMS_1205
Putative fatty acid hydroxylase.
   
   0.809
BMS_0842
Putative cytochrome P450 family protein.
   
 0.605
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.543
BMS_1204
Putative exported protein.
       0.537
BMS_0542
Putative AMP ligase.
    
 0.401
BMS_1649
Putative AMP-binding hydrolase enzyme; Similar to C-terminus of Chlorobium tepidum menh thioesterase, menaquinone synthesis gene. UniProt:Q8KBE3 (EMBL:AE006470) (275 aa) fasta scores: E()=8.5e-20, 31.538% id in 260 aa. May be a fusion protein.
    
 0.401
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.