STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1209Putative 8-amino-7-oxononanoate synthase. (401 aa)    
Predicted Functional Partners:
yghO
Conserved hypothetical protein.
   
 0.966
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.905
wbiG
Putative epimerase/dehydratase.
 
  
 0.862
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
    
 0.839
BMS_1868
Putative aminotransferase.
  
  
 0.801
BMS_1870
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.767
BMS_3105
Putative sorbitol/galactitol-1-phosphate 5-dehydrogenase.
  
  
 0.728
BMS_3020
Putative helicase.
   
    0.646
gcvT
Putative aminomethyltransferase.
  
 
 0.603
BMS_0542
Putative AMP ligase.
  
 
 0.595
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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