STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1243Putative ABC transportsystem, membrane protein. (475 aa)    
Predicted Functional Partners:
BMS_1241
Conserved hypothetical protein.
 
0.999
BMS_1242
Putative ABC transport system, ATP-binding protein.
 
 0.999
BMS_1240
Putative aminotransferase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.995
BMS_3256
Putative selenocysteine lyase.
 
 0.926
BMS_1244
Conserved hypothetical protein.
     
 0.835
BMS_1527
Putative SufE Fe/S-cluster-related protein.
 
 
 0.793
BMS_1239
Putative nitrogen fixation-related protein.
     
 0.786
BMS_0215
Conserved hypothetical protein.
  
 
 0.731
iscA
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.567
BMS_2231
Hypothetical protein.
  
 
 0.534
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (30%) [HD]