STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1245Putative membrane protein. (257 aa)    
Predicted Functional Partners:
BMS_1802
Putative transmembrane fatty acid synthesis protein.
  
     0.774
BMS_2024
Conserved hypothetical protein.
 
     0.669
BMS_2025
Putative molybdopterin biosynthesis protein.
 
     0.651
BMS_2248
Putative glycosyl transferase.
 
 
   0.616
BMS_0437
Putative mercury oxidoreductase.
 
     0.501
BMS_1243
Putative ABC transportsystem, membrane protein.
       0.488
BMS_1244
Conserved hypothetical protein.
       0.488
BMS_1240
Putative aminotransferase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.481
BMS_1241
Conserved hypothetical protein.
       0.481
BMS_1242
Putative ABC transport system, ATP-binding protein.
       0.481
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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