STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1271Putative general secretion pathway protein C. (550 aa)    
Predicted Functional Partners:
BMS_1270
Putative general secretion pathway protein D.
 
 
 0.990
cpaC
Putative pilus assembly-related protein; Belongs to the bacterial secretin family.
 
 
 0.945
BMS_2548
Conserved hypothetical protein; Belongs to the bacterial secretin family.
 
 
 0.869
BMS_1273
Putative lipoprotein.
 
     0.787
BMS_0267
Putative membrane protein.
  
     0.767
BMS_1262
Putative membrane protein.
 
   
 0.741
gspF
General secretion pathway protein F.
  
  
 0.740
BMS_0271
Putative membrane protein.
  
     0.739
BMS_1265
Putative exported protein.
  
  
 0.717
BMS_1269
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.717
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.