STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1283Putative lactoylglutathione lyase. (138 aa)    
Predicted Functional Partners:
mutB
Putative methylmalonyl-CoA mutase large subunit.
  
 0.984
BMS_3270
Putative propionyl-CoA carboxylase.
 
 
 0.960
BMS_1284
Putative transmembrane rhomboid family protein.
  
    0.776
BMS_1282
Putative exported protein.
       0.773
BMS_3250
Putative transport system kinase.
 
  
 0.762
icmF
Putative methylmalonyl CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
 
 0.750
BMS_1281
Putative membrane protein.
       0.664
BMS_1285
Hypothetical protein.
       0.565
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
 0.556
nuoI
Putative NADH dehydrogenase I subunit I.
  
  
 0.552
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.