STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1390Putative Na(+)/H(+) antiporter. (580 aa)    
Predicted Functional Partners:
BMS_1389
Putative membrane protein.
 
     0.665
BMS_2757
Putative magnesium binding ptotein.
     
 0.514
BMS_1631
Putative transmembrane Na+/Pi-cotransporter.
 
     0.501
BMS_1543
Putative phosphoserine phosphatase.
     
 0.499
BMS_1391
Putative membrane protein.
       0.493
BMS_0837
Conserved hypothetical protein.
  
  
 0.478
metC
Cystathionine beta-lyase.
  
  
 0.478
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.468
BMS_2819
Putative NAD(P)H dehydrogenase.
  
 
 0.468
hmpA
Putative flavohemoprotein; Belongs to the globin family.
     
 0.466
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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