STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1406Putative FNR-family transcriptional regulator protein. (235 aa)    
Predicted Functional Partners:
BMS_1401
Putative cytochrome C oxidase subunit; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.722
BMS_1398
Putative ferredoxin.
 
  
 0.622
BMS_1399
Putative cytochrome c.
 
  
 0.594
BMS_1405
Hypothetical protein.
       0.590
hemN
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.584
BMS_1403
Putative cation-transporting ATPase.
 
   
 0.581
BMS_1518
Putative histidine kinase/response regulator fusion protein.
  
 
 0.579
BMS_1402
Putative nitrogen fixation related protein.
  
    0.531
BMS_1225
Putative transmembrane adenylate/guanylate cyclase.
   
 0.527
BMS_1404
Hypothetical protein.
  
  
 0.519
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.