STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stpSerine/threonine phosphatase. (247 aa)    
Predicted Functional Partners:
BMS_1223
Putative 2-oxoisovalerate dehydrogenase, alpha and beta subunits.
  
 0.914
pdhAB
Putative pyruvate (oxoisovalerate) Dehydrogenase, alpha-beta fusion; Similar to C-terminus of Bacillus stearothermophilus (Geobacillus stearothermophilus) PdhB pyruvate dehydrogenase E1 component subunit beta (ec 1.2.4.1). UniProt:P21874 (EMBL:X53560) (324 aa) fasta scores: E()=8.4e-39, 39.296% id in 341 aa.
  
 0.914
BMS_2759
Putative serine/threonine-protein kinase.
 
 0.907
BMS_0541
Putative transferase.
  
   0.688
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.688
BMS_1498
Putative fatty acid cis/trans isomerase.
       0.648
gcvT
Putative aminomethyltransferase.
   
  0.636
BMS_3226
Conserved hypothetical protein.
 
 
 0.626
engC
Probable GTPase engC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.520
BMS_2874
Putative heat shock-like protein.
  
 
 0.500
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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