Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1502Conserved hypothetical protein. (504 aa)    
Predicted Functional Partners:
BMS_1501
Putative stress response protein; Belongs to the UPF0229 family.
 
  
 0.996
BMS_1500
Putative protein kinase.
 
  
 0.985
BMS_3056
Conserved hypothetical protein.
 
  
 0.959
ldh
Putative leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.597
BMS_2617
Putative exported protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.582
BMS_1503
Putative membrane protein.
       0.568
BMS_2591
Conserved hypothetical protein.
   
    0.536
BMS_2646
Putative phosphate starvation-inducible protein.
   
    0.513
BMS_2586
Putative exported protein.
   
  
 0.422
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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