STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1552Putative hydrolase. (280 aa)    
Predicted Functional Partners:
BMS_1553
Putative desaturase.
     
 0.778
BMS_1554
Putative desaturase.
     
 0.778
BMS_1551
Hypothetical protein.
       0.773
BMS_0482
Putative acyltransferase.
  
   0.637
BMS_0842
Putative cytochrome P450 family protein.
 
 
 0.580
BMS_3062
Putative dioxygenase.
  
     0.513
BMS_1550
Putative iron/ascorbate oxidoreductase family protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.509
BMS_1997
Putative beta-lactamase family protein.
  
    0.429
menD
Putative menaquinone biosynthesis bifunctional protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
 
  
 0.419
BMS_0481
Putative UDP-glucose 4-epimerase.
  
 
   0.403
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.