Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMS_1600Conserved hypothetical protein; Similar to C-terminus of Vibrio vulnificus putative uncharacterized protein. putative uncharacterized protein. UniProt:Q8D966 (295 aa) fasta scores: E()=0.0023, 24.823% id in 141 aa. (298 aa)    
Predicted Functional Partners:
BMS_1598
Putative pilus assembly protein.
  
 
 0.918
csuD
Putative pilus assembly protein; Central part of protein is similar to Acinetobacter baumannii CsuD. UniProt:Q6XBY3 (EMBL:AY241696) (832 aa) fasta scores: E()=7.2e-15, 22.384% id in 688 aa, and to Vibrio vulnificus (strain YJ016) p pilus assembly protein, porin papc. UniProt:Q7MLA7 (EMBL:BA000037) (800 aa) fasta scores: E()=9.8e-27, 21.026% id in 799 aa.
  
  
 0.828
BMS_2362
Hypothetical protein.
  
 
 0.622
BMS_1597
Putative fimbrial protein.
       0.553
purF
Putative amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
       0.498
purE
Putative phosphoribosylaminoimidazole carboxylase catalytic subunit.
       0.489
purC
Putative phosphoribosylaminoimidazolesuccinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.489
purD
Putative phosphoribosylamine--glycine ligase.
       0.489
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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