STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1627Putative helix-turn-helix DNA-binding protein. (189 aa)    
Predicted Functional Partners:
wcaJ
Putative UDP-glucose lipid carrier transferase.
  
  
 0.847
sodB
Putative superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.565
BMS_3137
Putative exported protein.
 
     0.528
BMS_0356
Possible sugar nucleotide epimerase/dehydratase.
  
  
 0.476
BMS_1629
Hypothetical protein.
       0.471
BMS_1630
Hypothetical protein.
       0.471
BMS_1518
Putative histidine kinase/response regulator fusion protein.
     
 0.453
rfbC
dTDP-D-glucose 4,6-dehydratase.
  
  
 0.447
rmlA
TDP-glucose pyrophosphorylase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.420
BMS_1450
Putative two-component sensor kinase (pseudogene); HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29.
     
 0.408
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.