Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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ubiEPutative menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (247 aa)    
Predicted Functional Partners:
menA
Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase (ec 2.5.1.-) (dhna-octaprenyltransferase); Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
  
 0.982
BMS_2819
Putative NAD(P)H dehydrogenase.
     
 0.901
BMS_0616
Conserved hypothetical protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
 
 0.825
menF
Putative menaquinone-specific isochorismate synthase.
 
   
 0.821
menD
Putative menaquinone biosynthesis bifunctional protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
     
 0.801
ispB
Putative octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.793
BMS_1659
Putative synthase.
     
 0.777
BMS_1658
Conserved hypothetical protein.
       0.639
BMS_1209
Putative 8-amino-7-oxononanoate synthase.
  
  
 0.453
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.403
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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