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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiEPutative menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (247 aa)    
Predicted Functional Partners:
menA
Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase (ec 2.5.1.-) (dhna-octaprenyltransferase); Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
  
 0.984
BMS_2819
Putative NAD(P)H dehydrogenase.
     
  0.900
menF
Putative menaquinone-specific isochorismate synthase.
 
   
 0.825
BMS_0616
Conserved hypothetical protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
   0.823
menD
Putative menaquinone biosynthesis bifunctional protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
     
 0.802
BMS_1659
Putative synthase.
       0.773
ispB
Putative octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.714
BMS_1658
Conserved hypothetical protein.
       0.639
BMS_0842
Putative cytochrome P450 family protein.
    
 
 0.420
BMS_1209
Putative 8-amino-7-oxononanoate synthase.
  
  
 0.414
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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