STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1706Putative L-lysine 2,3-aminomutase. (447 aa)    
Predicted Functional Partners:
BMS_0668
Conserved hypothetical protein.
  
  
 
0.920
BMS_1042
Putative alanine dehydrogenase.
     
  0.900
BMS_3023
Putative alanine dehydrogenase.
     
  0.900
BMS_1747
Putative diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
  0.800
lysA
Putative diaminopimelate decarboxylase.
     
  0.800
BMS_0904
Putative acetyltransferase.
  
 0.682
poxA
Putative lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
  
 0.671
cheR
Putative chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.625
BMS_2633
Putative chemotactic response, glutamate methyltransferase fusion protein.
    
   0.625
BMS_1705
Putative transmembrane protein.
       0.438
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.