STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1723Similar to Megasphaera elsdenii acyl-coa dehydrogenase, short-chain specific (ec 1.3.99.2) (scad) (butyryl-coa dehydrogenase) (bcad). UniProt:Q06319 (EMBL:L04528) (383 aa) fasta scores: E()=2.4e-20, 31.443% id in 388 aa, and to Leptospira interrogans acyl-coa dehydrogenase (ec 1.3.99.3). UniProt:Q8F2X4 (EMBL:AE010300) (586 aa) fasta scores: E()=1.7e-38, 31.903% id in 536 aa. (585 aa)    
Predicted Functional Partners:
etfA
Electron transfer flavoprotein alpha-subunit.
 
 0.945
fadB
Fatty acid oxidation complex subunit alpha.
  
 0.940
etfB
Putative electron transfer flavoprotein beta-subunit.
 
 0.912
BMS_2250
Putative NADH dehydrogenase I chain C/D.
   
 0.840
accC2
Putative biotin carboxylase 2 (pseudogene); HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 5.7e-41.
  
 0.766
BMS_1367
Putative acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.743
BMS_1822
Putative thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.743
BMS_1450
Putative two-component sensor kinase (pseudogene); HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29.
  
 0.687
BMS_0149
Putative long-chain fatty-acid CoA ligase.
  
 0.681
hbdA
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 
 
 0.625
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.