STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1837Conserved hypothetical protein; Codons 80 to the C-terminus are similar to N-terminus to codon 165 of Bordetella bronchiseptica (Alcaligenes bronchisepticus) Bph1 histone protein. UniProt:Q7WFA2 (EMBL:BX640450) (225 aa) fasta scores: E()=8.5e-10, 48.447% id in 161 aa. (235 aa)    
Predicted Functional Partners:
BMS_1838
Conserved hypothetical protein; Belongs to the UPF0312 family.
       0.620
asnS
asparaginyl-tRNA synthetase.
       0.505
BMS_1836
Putative Pfk family kinase.
       0.505
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.