STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1870Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (396 aa)    
Predicted Functional Partners:
BMS_1868
Putative aminotransferase.
 
  
 0.924
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
    
 0.920
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
 
 0.917
iolA
Malonic semialdehyde oxidative decarboxylase.
   
 0.914
aldH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.911
ggt
Gamma-glutamyltranspeptidase precursor.
    
 0.906
BMS_1869
Putative acyltransferase.
 
     0.811
BMS_1872
Putative 3-oxoadipate CoA-transferase subunit B.
  
  
 0.806
atoD1
Acetate CoA-transferase alpha subunit 1.
  
  
 0.797
BMS_3368
Putative aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.788
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.