STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1906Putative lipopolysaccharide biosynthesis-related protein. (365 aa)    
Predicted Functional Partners:
rfaE
Putative DP-heptose synthetase.
 
  
 0.938
BMS_2403
Putative transferase (LPS biosynthesis-related).
 
  
 0.905
BMS_2250
Putative NADH dehydrogenase I chain C/D.
    
   0.881
BMS_1904
Conserved hypothetical protein.
       0.773
cmk
Cytidylate kinase.
       0.773
BMS_3155
Putative ADP-heptose synthase.
 
  
 0.667
waaE
Lipopolysaccharide core biosynthesis glycosyl transferase.
 
  
 0.660
BMS_0079
Putative cytidyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.632
BMS_0395
Putative kipopolysaccharide biosynthesis protein.
  
     0.619
BMS_1908
Putative exported soluble lytic murein transglycosylase.
 
     0.611
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.