STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1908Putative exported soluble lytic murein transglycosylase. (313 aa)    
Predicted Functional Partners:
BMS_1906
Putative lipopolysaccharide biosynthesis-related protein.
 
     0.611
cmk
Cytidylate kinase.
  
    0.576
BMS_1904
Conserved hypothetical protein.
       0.548
rfaE
Putative DP-heptose synthetase.
       0.548
fliI
Putative flagellum-specific ATP synthase.
  
  
 0.523
BMS_0096
Putative flagellar hook associated protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.514
fliE
Flagellar hook-basal body complex protein fliE.
  
  
 0.514
BMS_1910
Putative CaiB/BaiF family protein; Belongs to the CoA-transferase III family.
  
    0.508
BMS_1909
Conserved hypothetical protein.
       0.501
fliM
Flagellar motor switch protein FliM.
  
    0.453
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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