STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1910Putative CaiB/BaiF family protein; Belongs to the CoA-transferase III family. (311 aa)    
Predicted Functional Partners:
BMS_1909
Conserved hypothetical protein.
 
     0.805
BMS_1450
Putative two-component sensor kinase (pseudogene); HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29.
  
 0.614
icmF
Putative methylmalonyl CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
   
 0.603
fadB
Fatty acid oxidation complex subunit alpha.
  
 
 0.526
BMS_3038
Putative acyl-CoA dehydrogenase oxidoreductase protein.
 
 
 0.509
BMS_1908
Putative exported soluble lytic murein transglycosylase.
  
    0.508
BMS_1991
Putative hydroxymethylglutaryl-CoA lyase.
 
 
  0.492
mutB
Putative methylmalonyl-CoA mutase large subunit.
     
 0.480
BMS_1998
Conserved hypothetical protein.
 
   
 0.457
BMS_1911
Putative membrane protein.
       0.455
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.