Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1968Putative cell wall-anchored protein. (911 aa)    
Predicted Functional Partners:
BMS_1969
Hypothetical protein.
       0.746
BMS_2065
Putative outer membrane protein.
    
 
 0.573
ftsK
DNA translocase; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.568
BMS_0289
Putative vitamin B12 receptor protein.
    
   0.529
BMS_1909
Conserved hypothetical protein.
    
   0.518
tRNA-Leu
tRNA-Leu; tRNA Leu anticodon CAA, Cove score 50.42.
  
    0.468
BMS_1967
Hypothetical protein.
       0.468
BMS_1970
Hypothetical protein.
       0.431
BMS_1925
Hypothetical protein.
 
     0.418
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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