Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMS_1987Putative signal-transduction sensor protein. (391 aa)    
Predicted Functional Partners:
BMS_1224
Putative methyl-accepting chemotaxis protein.
 
   0.962
BMS_3208
Putative methyl-accepting chemotaxis protein.
 
  
 0.946
BMS_1091
Putative methyl-accepting chemotaxis protein.
 
  
 0.932
BMS_0294
Putative methyl-accepting chemotaxis sensory transducer.
 
  
 0.798
BMS_2634
Putative methyl-accepting chemotaxis protein.
 
  
 0.767
BMS_1079
Putative methyl-accepting chemotaxis protein.
 
 0.667
fliM
Flagellar motor switch protein FliM.
 
  
 0.632
cheW
Putative chemotaxis protein.
 
  
 0.631
cheA
Chemotaxis two-component sensor kinase.
 
 
 0.602
BMS_1182
Putative methyl-accepting chemotaxis citrate transducer.
 
  
 0.597
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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