STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaGPutative enoyl-CoA hydratase. (269 aa)    
Predicted Functional Partners:
hbdA
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.971
echA8
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
0.961
BMS_1450
Putative two-component sensor kinase (pseudogene); HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29.
  
 0.960
paaG-2
Probable enoyl-CoA hydratase PaaG; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 
0.923
BMS_2002
Putative phenylacetic acid degradation protein.
  
 
 0.913
BMS_1991
Putative hydroxymethylglutaryl-CoA lyase.
 
 0.853
fadB
Fatty acid oxidation complex subunit alpha.
 
0.852
BMS_1518
Putative histidine kinase/response regulator fusion protein.
  
 
 0.785
BMS_2496
Putative histidine kinase/response regulator fusion protein.
   
 
 0.784
BMS_0897
Putative histidine kinase/response regulator fusion protein.
   
 
 0.768
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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