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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_2002Putative phenylacetic acid degradation protein. (273 aa)    
Predicted Functional Partners:
paaG-2
Probable enoyl-CoA hydratase PaaG; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.992
BMS_0639
Putative phenylacetate-coenzyme A ligase.
 
 
 0.977
BMS_0638
Putative phenylacetate-coenzyme A ligase.
 
 
 0.972
BMS_1450
Putative two-component sensor kinase (pseudogene); HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29.
 
  
 0.920
paaG
Putative enoyl-CoA hydratase.
  
 
 0.913
BMS_1999
4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.832
echA8
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.794
fadB
Fatty acid oxidation complex subunit alpha.
  
  
 0.541
BMS_1997
Putative beta-lactamase family protein.
       0.461
BMS_1998
Conserved hypothetical protein.
       0.461
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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