STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
talPutative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (214 aa)    
Predicted Functional Partners:
BMS_1113
Putative transketolase.
 
 0.992
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.976
fba
Putative fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
  
 
 0.963
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
  
 
 0.931
tpiA
Triosephosphate isomerase (TIM) (Triose-phosphate isomerase); Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 0.930
deoC
Deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA); Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
    
 0.922
BMS_0336
Putative transketolase C-terminal part.
  
 
 0.918
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.918
tkt
Putative 1-deoxy-d-xylulose-5-phosphate synthase; Similar to C-terminus of Escherichia coli (strain K12) dxs 1-deoxy-d-xylulose-5-phosphate synthase (ec 2.2.1.7) (1-deoxyxylulose- 5-phosphate synthase) (dxp synthase) (dxps). UniProt:P77488 (619 aa) fasta scores: E()=3e-14, 28.195% id in 266 aa, and to entire Leptospira interrogans tktc1 transketolase c-terminal section (ec 2.2.1.1). UniProt:Q8F5T1 (EMBL:AE010300) (334 aa) fasta scores: E()=2.8e-47, 45.484% id in 310 aa; transketolase C-terminal subunit.
  
 
 0.918
BMS_0337
Putative transketolase, thiamine disphosphate-binding subunit.
    
 0.917
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.