STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_2118Putative cysteine desulfurase. (388 aa)    
Predicted Functional Partners:
thiI
Thiamine biosynthesis protein thiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 0.961
BMS_1168
Putative molybdopterin converting factor.
   
 0.952
BMS_2119
Putative DNA-binding protein.
  
  
 0.925
nifS
Cysteine desulfurase.
  
  
 
0.925
iscS
Putative cysteine desulfurase.
  
  
 
0.921
BMS_1244
Conserved hypothetical protein.
  
  
 0.683
BMS_1511
Conserved hypothetical protein.
 
 0.633
iscA
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
 
  
 0.633
BMS_1239
Putative nitrogen fixation-related protein.
 
 
 0.622
BMS_2953
Putative chemotaxis-related protein (pseudogene); HMMPfam hit to PF00072, Response regulator receiver, score 7.1e-07.
 
 
 0.605
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.