Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_2128Putative transcriptional regulatory protein. (646 aa)    
Predicted Functional Partners:
ntrC
Nitrogen regulation protein.
 
  
 
0.929
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.789
BMS_2854
Putative regulatory protein.
  
 
 0.695
BMS_1518
Putative histidine kinase/response regulator fusion protein.
  
 
 0.647
BMS_1309
Putative two component system histidine kinase/response regulator fusion protein.
  
 
 0.627
BMS_2496
Putative histidine kinase/response regulator fusion protein.
  
 
 0.625
BMS_1225
Putative transmembrane adenylate/guanylate cyclase.
 
 
 0.623
BMS_0897
Putative histidine kinase/response regulator fusion protein.
  
 
 0.616
BMS_2580
Putative two-component system, histidine kinase.
 
 
 
 0.613
BMS_2753
Putative two-component response regulator with GGDEF sensory box protein.
  
  
 0.588
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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