Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_2136Putative lipoprotein. (376 aa)    
Predicted Functional Partners:
BMS_3180
Putative exported protein.
  
     0.683
BMS_1299
Putative periplasmic protein.
 
     0.634
BMS_2137
Putative ribosomal protein S6 modification protein.
       0.555
BMS_2957
Putative membrane protein.
  
     0.526
BMS_2134
Putative arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
       0.522
speB
Putative agmatinase; Belongs to the arginase family.
       0.516
BMS_3427
Putative exported protein.
  
     0.506
BMS_1766
Hypothetical protein.
  
     0.501
BMS_1855
Conserved hypothetical protein.
  
     0.483
BMS_2960
Putative two-component system, sensor kinase.
  
     0.446
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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