BMS_2196 protein (Halobacteriovorax marinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BMS_2196

Putative cytochrome B subunit. (224 aa)

Predicted Functional Partners:

BMS_2197

0.998

BMS_2198

0.998

BMS_0475

0.995

BMS_0474

0.993

sucC

0.919

sucD

0.918

BMS_0473

0.914

fumC

0.900

BMS_2649

0.800

aspC

0.800

Your Current Organism:

Halobacteriovorax marinus

NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS_0473	BMS_0474	BMS_0473	BMS_0474	Fumarate reductase transmembrane cytochrome b subunit.	Putative succinate dehydrogenase.	0.998
BMS_0473	BMS_0475	BMS_0473	BMS_0475	Fumarate reductase transmembrane cytochrome b subunit.	Putative succinate dehydrogenase iron-sulfur protein.	0.998
BMS_0473	BMS_2196	BMS_0473	BMS_2196	Fumarate reductase transmembrane cytochrome b subunit.	Putative cytochrome B subunit.	0.914
BMS_0473	BMS_2197	BMS_0473	BMS_2197	Fumarate reductase transmembrane cytochrome b subunit.	Fumarate reductase.	0.993
BMS_0473	BMS_2198	BMS_0473	BMS_2198	Fumarate reductase transmembrane cytochrome b subunit.	Fumarate reductase iron-sulfur protein.	0.995
BMS_0473	BMS_2649	BMS_0473	BMS_2649	Fumarate reductase transmembrane cytochrome b subunit.	Putative aspartate aminotransferase.	0.800
BMS_0473	aspC	BMS_0473	BMS_2692	Fumarate reductase transmembrane cytochrome b subunit.	Aspartate aminotransferase.	0.800
BMS_0473	fumC	BMS_0473	BMS_0823	Fumarate reductase transmembrane cytochrome b subunit.	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.900
BMS_0473	sucC	BMS_0473	BMS_2187	Fumarate reductase transmembrane cytochrome b subunit.	succinyl-CoA synthetase beta chain (SCS-beta); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.915
BMS_0473	sucD	BMS_0473	BMS_2186	Fumarate reductase transmembrane cytochrome b subunit.	succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.914
BMS_0474	BMS_0473	BMS_0474	BMS_0473	Putative succinate dehydrogenase.	Fumarate reductase transmembrane cytochrome b subunit.	0.998
BMS_0474	BMS_0475	BMS_0474	BMS_0475	Putative succinate dehydrogenase.	Putative succinate dehydrogenase iron-sulfur protein.	0.999
BMS_0474	BMS_2196	BMS_0474	BMS_2196	Putative succinate dehydrogenase.	Putative cytochrome B subunit.	0.993
BMS_0474	BMS_2197	BMS_0474	BMS_2197	Putative succinate dehydrogenase.	Fumarate reductase.	0.902
BMS_0474	BMS_2198	BMS_0474	BMS_2198	Putative succinate dehydrogenase.	Fumarate reductase iron-sulfur protein.	0.998
BMS_0474	BMS_2649	BMS_0474	BMS_2649	Putative succinate dehydrogenase.	Putative aspartate aminotransferase.	0.809
BMS_0474	aspC	BMS_0474	BMS_2692	Putative succinate dehydrogenase.	Aspartate aminotransferase.	0.809
BMS_0474	fumC	BMS_0474	BMS_0823	Putative succinate dehydrogenase.	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.979
BMS_0474	sucC	BMS_0474	BMS_2187	Putative succinate dehydrogenase.	succinyl-CoA synthetase beta chain (SCS-beta); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.975
BMS_0474	sucD	BMS_0474	BMS_2186	Putative succinate dehydrogenase.	succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.975