Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMS_2373Putative endonuclease. (269 aa)    
Predicted Functional Partners:
dppA
Periplasmic dipeptide transport protein precursor.
       0.503
dppB
Putative dipeptide transport system permease protein.
       0.503
dppC
Putative didpeptide permease component of ABC transporter.
       0.503
dppD
Putative dipeptide ABC transporter component; Belongs to the ABC transporter superfamily.
       0.503
dppF
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.503
BMS_2372
Conserved hypothetical protein; Similar, but extended at the C-terminus, to Bdellovibrio bacteriovorus. putative uncharacterized protein precursor. UniProt:Q6MPG8 (EMBL:BX842648 (486 aa) fasta scores: E()=1.3e-25, 31.992% id in 472 aa.
       0.495
BMS_1958
Hypothetical protein.
  
     0.489
BMS_2088
Putative protease; Belongs to the peptidase S1B family.
  
     0.421
BMS_2354
Putative peptidase; Belongs to the peptidase S1B family.
  
     0.409
BMS_1529
Putative exported protease.
  
     0.408
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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