STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_2471Putative carboxypeptidase. (450 aa)    
Predicted Functional Partners:
BMS_0740
Putative protease.
  
 
 0.588
BMS_0805
Putative antibiotic modification-related protein.
  
     0.587
BMS_2472
Putative ribosomal protein S6 modification protein; Belongs to the RimK family.
       0.533
BMS_2469
Putative exported protein.
       0.522
BMS_1712
Putative cation efflux transmembrane transport protein; Similar to Rhodopseudomonas palustris putative potassium channel protein rpa4233. UniProt:Q02006 (EMBL:BX572606) (412 aa) fasta scores: E()=1.2e-05, 20.057% id in 349 aa, and to Enterococcus faecalis (Streptococcus faecalis) ion transporter, putative. UniProt:Q830D3 (EMBL:AE016830) (242 aa) fasta scores: E()=2.6e-09, 26.336% id in 262 aa.
  
     0.500
BMS_1958
Hypothetical protein.
  
     0.488
BMS_1045
Conserved hypothetical protein.
  
     0.470
BMS_2154
Hypothetical protein.
  
     0.461
BMS_2853
Putative glycoprotein.
  
     0.458
BMS_3363
Conserved hypothetical protein.
  
     0.431
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.