STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_2564Putative exported protein. (563 aa)    
Predicted Functional Partners:
BMS_2565
Putative lipoprotein.
 
  
 0.960
BMS_2567
Putative exported protein.
       0.777
BMS_2566
Putative lipoprotein.
       0.741
BMS_2586
Putative exported protein.
  
     0.609
BMS_2562
Hypothetical protein.
       0.542
BMS_1547
Conserved hypothetical protein.
  
     0.537
BMS_0267
Putative membrane protein.
  
     0.529
BMS_1271
Putative general secretion pathway protein C.
  
     0.467
BMS_2568
Hypothetical protein.
       0.459
BMS_3240
Putative membrane protein.
  
     0.436
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.