STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbdAPutative 3-hydroxybutyryl-CoA dehydrogenase. (283 aa)    
Predicted Functional Partners:
crt1
3-hydroxybutyryl-CoA dehydratase (crotonase); Belongs to the enoyl-CoA hydratase/isomerase family.
 0.999
echA8
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.996
BMS_2765
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 0.989
BMS_1822
Putative thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.988
BMS_1367
Putative acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.985
paaG
Putative enoyl-CoA hydratase.
 
 0.971
fadB
Fatty acid oxidation complex subunit alpha.
 
0.944
accC2
Putative biotin carboxylase 2 (pseudogene); HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 5.7e-41.
 
 
 0.937
paaG-2
Probable enoyl-CoA hydratase PaaG; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.934
BMS_2004
3-hydroxybutyryl-CoA dehydrogenase (pseudogene); HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 2.5e-09; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.928
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.