BMS_2807 protein (Halobacteriovorax marinus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

BMS_2807

Putative membrane protein. (413 aa)

Predicted Functional Partners:

BMS_2808

0.786

def

0.542

BMS_2805

0.403

Your Current Organism:

Halobacteriovorax marinus

NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS_2805	BMS_2807	BMS_2805	BMS_2807	Putative low molecular weight protein-tyrosine-phosphatase.	Putative membrane protein.	0.403
BMS_2805	BMS_2808	BMS_2805	BMS_2808	Putative low molecular weight protein-tyrosine-phosphatase.	Putative exported protein.	0.416
BMS_2805	def	BMS_2805	BMS_2806	Putative low molecular weight protein-tyrosine-phosphatase.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.560
BMS_2807	BMS_2805	BMS_2807	BMS_2805	Putative membrane protein.	Putative low molecular weight protein-tyrosine-phosphatase.	0.403
BMS_2807	BMS_2808	BMS_2807	BMS_2808	Putative membrane protein.	Putative exported protein.	0.786
BMS_2807	def	BMS_2807	BMS_2806	Putative membrane protein.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.542
BMS_2808	BMS_2805	BMS_2808	BMS_2805	Putative exported protein.	Putative low molecular weight protein-tyrosine-phosphatase.	0.416
BMS_2808	BMS_2807	BMS_2808	BMS_2807	Putative exported protein.	Putative membrane protein.	0.786
BMS_2808	def	BMS_2808	BMS_2806	Putative exported protein.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.561
def	BMS_2805	BMS_2806	BMS_2805	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Putative low molecular weight protein-tyrosine-phosphatase.	0.560
def	BMS_2807	BMS_2806	BMS_2807	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Putative membrane protein.	0.542
def	BMS_2808	BMS_2806	BMS_2808	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Putative exported protein.	0.561