BMS_3003 protein (Halobacteriovorax marinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BMS_3003

Putative ABC transport system solute-binding protein. (587 aa)

Predicted Functional Partners:

BMS_3001

0.997

BMS_3002

0.997

BMS_3231

0.985

oppB_1

0.978

BMS_0503

0.966

BMS_3174

0.956

BMS_0075

0.937

BMS_0153

0.909

dppC

0.842

dppF

0.809

Your Current Organism:

Halobacteriovorax marinus

NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS_0075	BMS_0153	BMS_0075	BMS_0153	Putative periplasmic substrate-binding transport protein.	Putative extracellular solute-binding protein.	0.915
BMS_0075	BMS_0503	BMS_0075	BMS_0503	Putative periplasmic substrate-binding transport protein.	Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.	0.911
BMS_0075	BMS_3001	BMS_0075	BMS_3001	Putative periplasmic substrate-binding transport protein.	Putative oligopeptide transport system permease protein.	0.976
BMS_0075	BMS_3002	BMS_0075	BMS_3002	Putative periplasmic substrate-binding transport protein.	Putative ABC transporter, permease protein.	0.973
BMS_0075	BMS_3003	BMS_0075	BMS_3003	Putative periplasmic substrate-binding transport protein.	Putative ABC transport system solute-binding protein.	0.937
BMS_0075	BMS_3174	BMS_0075	BMS_3174	Putative periplasmic substrate-binding transport protein.	Putative peptide-binding exported protein.	0.938
BMS_0075	BMS_3231	BMS_0075	BMS_3231	Putative periplasmic substrate-binding transport protein.	Putative dipeptide transport system permease protein.	0.986
BMS_0075	dppC	BMS_0075	BMS_2376	Putative periplasmic substrate-binding transport protein.	Putative didpeptide permease component of ABC transporter.	0.897
BMS_0075	dppF	BMS_0075	BMS_2378	Putative periplasmic substrate-binding transport protein.	Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.730
BMS_0075	oppB_1	BMS_0075	BMS_3232	Putative periplasmic substrate-binding transport protein.	Oligopeptide permease.	0.988
BMS_0153	BMS_0075	BMS_0153	BMS_0075	Putative extracellular solute-binding protein.	Putative periplasmic substrate-binding transport protein.	0.915
BMS_0153	BMS_0503	BMS_0153	BMS_0503	Putative extracellular solute-binding protein.	Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.	0.969
BMS_0153	BMS_3001	BMS_0153	BMS_3001	Putative extracellular solute-binding protein.	Putative oligopeptide transport system permease protein.	0.990
BMS_0153	BMS_3002	BMS_0153	BMS_3002	Putative extracellular solute-binding protein.	Putative ABC transporter, permease protein.	0.990
BMS_0153	BMS_3003	BMS_0153	BMS_3003	Putative extracellular solute-binding protein.	Putative ABC transport system solute-binding protein.	0.909
BMS_0153	BMS_3174	BMS_0153	BMS_3174	Putative extracellular solute-binding protein.	Putative peptide-binding exported protein.	0.951
BMS_0153	BMS_3231	BMS_0153	BMS_3231	Putative extracellular solute-binding protein.	Putative dipeptide transport system permease protein.	0.986
BMS_0153	dppC	BMS_0153	BMS_2376	Putative extracellular solute-binding protein.	Putative didpeptide permease component of ABC transporter.	0.826
BMS_0153	dppF	BMS_0153	BMS_2378	Putative extracellular solute-binding protein.	Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.808
BMS_0153	oppB_1	BMS_0153	BMS_3232	Putative extracellular solute-binding protein.	Oligopeptide permease.	0.980