metC protein (Halobacteriovorax marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

metC

Cystathionine beta-lyase. (389 aa)

Predicted Functional Partners:

BMS_3011

0.999

metH

0.977

gshA

0.949

BMS_2649

0.925

aspC

0.925

ilvE

0.922

BMS_0610

0.915

dat

0.915

metG

0.912

BMS_1486

0.904

Your Current Organism:

Halobacteriovorax marinus

NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS_0610	dat	BMS_0610	BMS_2294	Putative aminotransferase.	Putative D-alanine aminotransferase.	0.928
BMS_0610	gshA	BMS_0610	BMS_3010	Putative aminotransferase.	Putative glutamate-cysteine ligase.	0.900
BMS_0610	ilvE	BMS_0610	BMS_2509	Putative aminotransferase.	Putative branched-chain amino acid transaminase.	0.900
BMS_0610	metC	BMS_0610	BMS_3012	Putative aminotransferase.	Cystathionine beta-lyase.	0.915
BMS_0610	metH	BMS_0610	BMS_0311	Putative aminotransferase.	B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.505
BMS_1486	metC	BMS_1486	BMS_3012	Thioredoxin reductase (NADPH).	Cystathionine beta-lyase.	0.904
BMS_2649	aspC	BMS_2649	BMS_2692	Putative aspartate aminotransferase.	Aspartate aminotransferase.	0.922
BMS_2649	gshA	BMS_2649	BMS_3010	Putative aspartate aminotransferase.	Putative glutamate-cysteine ligase.	0.801
BMS_2649	metC	BMS_2649	BMS_3012	Putative aspartate aminotransferase.	Cystathionine beta-lyase.	0.925
BMS_3011	gshA	BMS_3011	BMS_3010	Putative cystathionine beta-synthase.	Putative glutamate-cysteine ligase.	0.771
BMS_3011	metC	BMS_3011	BMS_3012	Putative cystathionine beta-synthase.	Cystathionine beta-lyase.	0.999
BMS_3011	metH	BMS_3011	BMS_0311	Putative cystathionine beta-synthase.	B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.959
aspC	BMS_2649	BMS_2692	BMS_2649	Aspartate aminotransferase.	Putative aspartate aminotransferase.	0.922
aspC	gshA	BMS_2692	BMS_3010	Aspartate aminotransferase.	Putative glutamate-cysteine ligase.	0.801
aspC	metC	BMS_2692	BMS_3012	Aspartate aminotransferase.	Cystathionine beta-lyase.	0.925
dat	BMS_0610	BMS_2294	BMS_0610	Putative D-alanine aminotransferase.	Putative aminotransferase.	0.928
dat	gshA	BMS_2294	BMS_3010	Putative D-alanine aminotransferase.	Putative glutamate-cysteine ligase.	0.900
dat	ilvE	BMS_2294	BMS_2509	Putative D-alanine aminotransferase.	Putative branched-chain amino acid transaminase.	0.900
dat	metC	BMS_2294	BMS_3012	Putative D-alanine aminotransferase.	Cystathionine beta-lyase.	0.915
dat	metH	BMS_2294	BMS_0311	Putative D-alanine aminotransferase.	B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.505