Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_3065Putative twitching mobility protein. (400 aa)    
Predicted Functional Partners:
pilG
Pilus-assembly protein.
 
  
 0.803
gspF
General secretion pathway protein F.
 
  
 0.802
pilD
Putative type IV prepilin signal peptidase.
 
   
 0.793
BMS_0127
Putative pilus assembly protein.
 
   
 0.680
pilE
Pilin.
 
   
 0.581
BMS_3066
Putative membrane protein.
       0.485
BMS_1518
Putative histidine kinase/response regulator fusion protein.
     
 0.480
BMS_0131
Putative pilus assembly protein.
 
   
 0.467
BMS_3067
Putative transmembrane protein.
       0.457
BMS_1269
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
0.411
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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