STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3137Putative exported protein. (379 aa)    
Predicted Functional Partners:
BMS_2877
Putative membrane protein.
  
     0.690
dsbD
Putative thiol:disulfide interchange protein.
  
 
 0.686
BMS_3138
Putative glycosyl transferase.
       0.568
BMS_3139
Hypothetical protein.
       0.568
BMS_3140
Hypothetical protein.
       0.568
BMS_1627
Putative helix-turn-helix DNA-binding protein.
 
     0.528
BMS_0553
Putative membrane protein.
  
     0.520
BMS_0867
Putative exported protein.
  
 
 0.518
BMS_1925
Hypothetical protein.
  
     0.489
BMS_0267
Putative membrane protein.
  
     0.484
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.