STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3144Hypothetical protein. (350 aa)    
Predicted Functional Partners:
BMS_3141
Putative O-antigen export ABC transporter, ATP-binding protein.
       0.782
BMS_3142
Putative polysaccharide export ABC transporter permease protein.
       0.782
BMS_3143
Hypothetical protein.
  
    0.774
BMS_3147
Putative transferase.
  
    0.594
BMS_3145
Conserved hypothetical protein.
       0.584
BMS_3146
Putative glycosyl transferase.
       0.584
BMS_1766
Hypothetical protein.
  
     0.435
BMS_0084
Putative metallophosphoesterase.
  
     0.420
tkt
Putative 1-deoxy-d-xylulose-5-phosphate synthase; Similar to C-terminus of Escherichia coli (strain K12) dxs 1-deoxy-d-xylulose-5-phosphate synthase (ec 2.2.1.7) (1-deoxyxylulose- 5-phosphate synthase) (dxp synthase) (dxps). UniProt:P77488 (619 aa) fasta scores: E()=3e-14, 28.195% id in 266 aa, and to entire Leptospira interrogans tktc1 transketolase c-terminal section (ec 2.2.1.1). UniProt:Q8F5T1 (EMBL:AE010300) (334 aa) fasta scores: E()=2.8e-47, 45.484% id in 310 aa; transketolase C-terminal subunit.
  
    0.401
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.