STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3146Putative glycosyl transferase. (926 aa)    
Predicted Functional Partners:
BMS_3145
Conserved hypothetical protein.
 
     0.801
BMS_3147
Putative transferase.
       0.777
BMS_3142
Putative polysaccharide export ABC transporter permease protein.
 
  
 0.769
BMS_3141
Putative O-antigen export ABC transporter, ATP-binding protein.
 
 
 0.764
wcaJ
Putative UDP-glucose lipid carrier transferase.
  
  
 0.642
BMS_3143
Hypothetical protein.
       0.584
BMS_3144
Hypothetical protein.
       0.584
BMS_3153
Putative NAD dependent epimerase/dehydratase.
  
    0.547
galE
UDP-glucose 4-epimerase.
  
    0.547
rfbC
dTDP-D-glucose 4,6-dehydratase.
  
  
 0.522
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.