STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3148Hypothetical protein. (340 aa)    
Predicted Functional Partners:
BMS_3153
Putative NAD dependent epimerase/dehydratase.
 
     0.927
galE
UDP-glucose 4-epimerase.
 
     0.853
BMS_3155
Putative ADP-heptose synthase.
 
     0.827
tkt-2
Putative transketolase, thiamine disphosphate-binding N subunit.
 
     0.822
tkt
Putative 1-deoxy-d-xylulose-5-phosphate synthase; Similar to C-terminus of Escherichia coli (strain K12) dxs 1-deoxy-d-xylulose-5-phosphate synthase (ec 2.2.1.7) (1-deoxyxylulose- 5-phosphate synthase) (dxp synthase) (dxps). UniProt:P77488 (619 aa) fasta scores: E()=3e-14, 28.195% id in 266 aa, and to entire Leptospira interrogans tktc1 transketolase c-terminal section (ec 2.2.1.1). UniProt:Q8F5T1 (EMBL:AE010300) (334 aa) fasta scores: E()=2.8e-47, 45.484% id in 310 aa; transketolase C-terminal subunit.
 
     0.819
aroB
3-dehydroquinate synthase.
     
 0.799
BMS_3152
Hypothetical protein.
       0.796
aroC
Putative chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
     
 0.791
BMS_3149
Conserved hypothetical protein.
       0.782
aroA
Putative 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.782
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.