STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3225Conserved hypothetical protein. (759 aa)    
Predicted Functional Partners:
BMS_3227
Putative membrane protein.
 
     0.946
BMS_3224
Putive phosphatase.
 
 
 0.877
BMS_3226
Conserved hypothetical protein.
 
    
0.840
BMS_3229
Putative membrane protein.
 
     0.811
BMS_3228
Putative putative secreted protein.
       0.782
BMS_2759
Putative serine/threonine-protein kinase.
 
 
 
 0.757
BMS_1425
Putative exported protein.
  
     0.725
wapA
Putative exported protein.
 
    0.714
BMS_1619
Putative hemagglutinin/hemolysin protein; Codons 330 to 2490 are similar to codons 125 to 2300 of Staphylococcus epidermidis (strain ATCC 12228) streptococcal hemagglutinin protein. UniProt:Q8CMU7 (EMBL:AE015929) (2310 aa) fasta scores: E()=1e-27, 19.603% id in 2168 aa, and codons 595 to 1830 are similar to codon 125 to codon 1370 of Rhodopirellula baltica probable surface-associated protein CshA. UniProt:Q7UY66 (EMBL:BX294134) (1543 aa) fasta scores: E()=6.7e-44, 25.792% id in 1295 aa.
  
     0.708
BMS_1377
Hypothetical protein.
  
     0.698
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.