STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3228Putative putative secreted protein. (115 aa)    
Predicted Functional Partners:
BMS_3229
Putative membrane protein.
 
     0.951
tadB
Putative pilus assembly-related protein.
 
     0.801
BMS_3224
Putive phosphatase.
 
     0.799
cpaB
Putative pilus assembly-related protein.
 
     0.797
tadA
Putative pilus assembly-related protein.
 
     0.790
BMS_3225
Conserved hypothetical protein.
       0.782
BMS_3226
Conserved hypothetical protein.
       0.782
BMS_3227
Putative membrane protein.
       0.782
cpaF
Putative tight adherance flp pilus assembly protein.
 
     0.745
BMS_1415
Putative bacterial secretion system protein.
 
     0.730
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.