Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3229Putative membrane protein. (404 aa)    
Predicted Functional Partners:
tadA
Putative pilus assembly-related protein.
 
 
 0.998
tadB
Putative pilus assembly-related protein.
 
 
 0.998
cpaB
Putative pilus assembly-related protein.
 
 
 0.995
BMS_1415
Putative bacterial secretion system protein.
 
 
 0.991
cpaF
Putative tight adherance flp pilus assembly protein.
 
 
 0.991
BMS_3228
Putative putative secreted protein.
 
     0.952
cpaC
Putative pilus assembly-related protein; Belongs to the bacterial secretin family.
  
  
  0.917
BMS_2549
Putative TadA-like protein.
 
  
 0.889
BMS_3227
Putative membrane protein.
 
     0.836
BMS_3225
Conserved hypothetical protein.
 
     0.810
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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