Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3233Putative exported protein. (263 aa)    
Predicted Functional Partners:
BMS_3231
Putative dipeptide transport system permease protein.
       0.773
oppB_1
Oligopeptide permease.
       0.773
BMS_3234
Hypothetical protein.
       0.773
mreB
Rod shape-determining protein.
       0.741
BMS_3236
Putative AMP nucleosidase.
       0.673
nagZ
Beta-hexosaminidase.
       0.664
BMS_3224
Putive phosphatase.
       0.480
BMS_3225
Conserved hypothetical protein.
       0.480
BMS_3226
Conserved hypothetical protein.
       0.480
BMS_3227
Putative membrane protein.
       0.480
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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