Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3358Hypothetical protein. (165 aa)    
Predicted Functional Partners:
BMS_3356
Hypothetical protein.
       0.773
flgM
Putative flagella-related protein.
       0.773
flgK
Putative flagellar hook-associated protein 1.
       0.752
flgL
Putative flagellar hook-associated protein 3.
       0.752
flgG
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
       0.539
BMS_3353
Hypothetical protein.
       0.539
BMS_3354
Hypothetical protein.
       0.539
flgI
Flagellar P-ring protein precursor (Basal body P-ring protein); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
       0.539
csrA
Carbon storage regulator homolog; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
       0.456
flgG2
Putative flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
       0.406
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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