STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3364Putative comtepence-related protein. (245 aa)    
Predicted Functional Partners:
BMS_0577
Putative outer membrane protein.
 
 
 0.921
BMS_2009
Putative exported protein.
  
 
 0.902
BMS_0140
Putative outer membrane protein.
 
 
 0.850
BMS_3363
Conserved hypothetical protein.
     
 0.780
BMS_2154
Hypothetical protein.
   
 
 0.779
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 
 0.767
BMS_0730
Putative membrane protein.
  
 
 0.754
BMS_3366
Putative cyclic nucleotide-binding protein.
  
    0.620
BMS_3365
Putative membrane protein.
       0.601
BMS_3367
Putative membrane protein.
       0.583
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.